Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHDKFDNVTFTINGTRESLFNFVFCEDQCTELSVQKTLDYLRARNIEATWVMNSHTKTQGILEKCGIKHVSTPKKVLLNMKNYFLPADVVPGLKLNAVTSSNLLKQLDSYTSKIFHHSIGIVS-TFFRGLSNYDDKNSGLRFFLVTL-NDEIIGTCGFYIQ---DSVAGFYSDGVLPIYRNRGIGTQMVLDRIKIIQQLECKHVVAHCMKPSVNLYKRLGFQILGNLYLYTSSA
3GY9 Chain:A ((3-136))
-------------------------------------------------------------------------------------------DVTIERV-NDFDGYNWLPLLAKSSQEGFQLVERMLRNRREESF-QEDGEAMFVALSTTNQVLACGGYMKQSGQARTGRIRHVYVLPEARSHGIGTALLEKIMSEAFL-TYDRLVLY-SEQADPFYQGLGFQLVSGEKITHTLD
General information:
TITO was launched using:
RESULT:
Template:
3GY9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88269 for 907 contacts (-97.3/contact) +
2D Compatibility (PS) -13872 + (NN) -2578 + (LL) 6628
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -103141.0 ( -113.72 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_3GY9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GY9-query.scw
PDB file :
Tito_Scwrl_3GY9.pdb
: