Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MNKEKLFYTIGEVAEELHLEQHVLRFWESQFRQIKPIKRKG-RRLYDHKCIEVIKKIKYMLYDKGYTIKGVQKEFDNNIKSSCNFGNLLPQLIDLRDYLINKINSEKSNEQL
4R4E Chain:A ((1-83))
MSDNIRRSMPLFPIGIVMQLTELSARQIRYYEEN-GLIFPARTEGNRRLFSFHDVDKLLEIKHLI-EQGVNMAGIKQILAKAEAE-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4R4E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33441 for 505 contacts (-66.2/contact) +
2D Compatibility (PS) -7999 + (NN) -1035 + (LL) 1900
1D Compatibility (HY) -5200 + (ID) 800
Total energy: -46575.0 ( -92.23 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_4R4E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R4E-query.scw
PDB file :
Tito_Scwrl_4R4E.pdb
: