Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSKEHDFHLVDSSPWPIAMSAAIFILVLGLVGTLHKQVSGIFGLVLGTSAVSGVLFYWWKDVVKEAIYDKCHTAIVKHGLKFAMYLFILSEVVFFIVFFCSFFKAWLDPVFLFETFSPTKKVKWPPEGILLPDPWSLPFMNTLILLLSGTTITWAHHSLF-KDDKKSMIKMLYITILLGVFFVIVQAIEYHETSFSLQEAGIYASNFYMITGFHCAHVIIGIIFLSVCLFRARKDQFTPQDHLCFEFASWYWHFVDIVWIFLFVFVYWLSVF
1M57 Chain:C ((3-262))
-HAKNHDYHILPPSIWPFMASVGAFVMLFGAVLWMHG--SGPWMGLIGLVVVLYTMFGWWSDVVTESL-EGDHTPVVRLGLRWGFILFIMSEVMFFSAWFWSFFKHALYPM---GPESPIIDGIFPPEGIITFDPWHLPLINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSHAAFGFA-GNIYGANFFMATGFHGFHVIVGTIFLLVCLIRVQRGHFTPEKHVGFEAAIWYWHFVDVVWLFLFASIYIWGQ-
General information:
TITO was launched using:
RESULT:
Template:
1M57.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -233417 for 1795 contacts (-130.0/contact) +
2D Compatibility (PS) -27139 + (NN) -15762 + (LL) 1312
1D Compatibility (HY) -30800 + (ID) 5950
Total energy: -311756.0 ( -173.68 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_1M57.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M57-query.scw
PDB file :
Tito_Scwrl_1M57.pdb
: