Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEERYSTKRITVKEIDEILYEEHRVLDHGFIRVVDYMGSDSAIVQAARVSYGKGTKQINQDEVLIKYLMRYHHTTPFEMCEIKFHVKLPIFIARQWIRHRTANVNEYSARYSILDHEFYIPEPEQVAKQSDNNKQGSGEAFDLDISKEIIDSLIND-SNLVYSHYNKFIEQGLTREIARTNLTLNYYTQFYWKVDLHNLLHFLKLRADKRAQHEIRVYAEVILDIVKKWVPLVHSAFVEYCLESACISRTGLGIIRKLIRGENVTREESNIGKREWEELMFILDKQPER
3G4A Chain:B ((17-221))
-------------------------ILDKGFVELVDVMGNDLSAVRAARVSFDMGLKDEERDRHLIEYLMKHGHETPFEHIVFTFHVKAPIFVARQWFRHRIASYNELAGRYSKLSYEFYIPSPERL------------EGYKTTIPPERVTEKISEIVDKAYRTYLELIESGVPREVARIVLPLNLYTRFFWTVNARSLMNFLNLRADSHAQWEIQQYALAIARIFKEKCPWTFEAFLKYAYKGDILKEVQ--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3G4A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163321 for 1518 contacts (-107.6/contact) +
2D Compatibility (PS) -21327 + (NN) -1972 + (LL) 5064
1D Compatibility (HY) -19200 + (ID) 4850
Total energy: -205606.0 ( -135.45 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_3G4A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G4A-query.scw
PDB file :
Tito_Scwrl_3G4A.pdb
: