Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAEEINIMNDFTNNNNSSDSSIFQGKICPEDLNKAQEVNELKGVTEELFKKIELQKQEYEGLGKEASSEIQGMFTPVMLGDDNPTDGGIVEETLAELGKFFQSLLSEFEIELDPKTYEMINGKREKNWLAAIIKFLHDKLKELVEKVFSCDLSFDERVDKEIKELEEKLLSGGFSKEEEVAVLGKLEALRELKLKLQMAVAGWIVAMVAEIFAVELVVAAEGTGTAKEEDKKAEKTSSKKEVEVCKEIGIKVGEDEKLRILPISLFLIPARGQSNRLIIPPLKPEEQNLLRDSLKKMIHGPEHDVNRENCEVKETKVEENKQVEELIAVRPTASGQPATNSMELKDTQRDNSDWKEMKGQGKNNTCKKTLRQSNRGFVSNDNTSR--RPAQSSVFSRETPEQLAQEYVFNGEASTQHATKSVSNRGSSGQPMKGSVVGSEYDFSTWSNAEYEAQQSSVNNAQPTSECNDVKVNNHVNSMGRAQGEAQSR |
1LAM Chain:? ((160-484)) | FASGQNLARRLMETP-------------ANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKG-----------------------------SEEPPVFLEIHYKGSPNASEPP-------------LVFVGKGITFD-------------------SGGISIKAAA---------NMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAA------TLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPL------------------------------FEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRKGMAGRP--------------------------------------------TRTLIEFLFRFSQ- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LAM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 99296 for 3067 contacts (32.4/contact) +
2D Compatibility (PS) -33478 + (NN) 1849 + (LL) 9412
1D Compatibility (HY) -2000 + (ID) 2050
Total energy: 73029.0 ( 23.81 by residue)
QMean score : 0.066
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