Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKPIGVIDSGVGGLTVAKEIMR-QLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPG--ARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSE----SDTVILGCTHYPLLYKPIYDYFGGK------KTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATGDPTHITNIIKEWLNLSVNVERISVND
2JFY Chain:B ((3-255))
----IGVFDSGVGGFSVLKSLLKARLFDEIIYY-GDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQ-QGYLNISHLATSLFVPLIEE------SILEGELLETCMHYYFTPLEILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAIVEYLQQKYALKNNACTF---PKVEFHASGDVIWLERQAKEWLKL-----------
General information:
TITO was launched using:
RESULT:
Template:
2JFY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173525 for 2112 contacts (-82.2/contact) +
2D Compatibility (PS) -25131 + (NN) -4083 + (LL) 1480
1D Compatibility (HY) -22000 + (ID) 4600
Total energy: -227859.0 ( -107.89 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_2JFY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFY-query.scw
PDB file :
Tito_Scwrl_2JFY.pdb
: