Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKLVVGSRRSKLALTQSQQFIN-----KLKAV-------EPNLEIEIKEIVTKGD-RIVDKQLSKVGGKGLFV-----KEIQHELFEKNIDMAIHSLKDVP-------SVIPE-------GLTLGCIPDRELPFDAYISKTHTPLSQLPEGSIIGTSSLRRGAQILSK-YPNLEI----KWIRGNIDTRLEKLQTEDYDAIIL--------AAAGLRRMGWSD---------DIVTSY-------------LDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGSCQVPIAGYATISDQKEIEF-------------TGLIMTPDGKERFEYTMNGTDPVELGK-------------TVSNKLKEQGAYEIIKRLNEQH |
| 4XD1 Chain:A ((21-417)) | MKLIIAG--KNNIAVDVTKWIIKTISDIELYSVCNENDHGNDSFQLSFKKFCIQFNIPIISLEDAYHLEDAIFLSLEFDKIIHPSKFTHNRIFNIH-FSYLPAYKGMYTSAWPILNNEQESGVTLHKI-DHGIDTGAIIDQQKFPLDIEETAKTLYLKYIKIGTEIVIKNLPALISGNYSIVEQSAIKSSYYSKKSIDYKNLMIDLNKTAHEILQQIRAFTFRDYQLPRIDDIDIFHGEILSSKSLSKPGTILEKNNYHLILSTIDYDIKLYSDNFDEILTACEDKSPEFISKLLKTENILFEKNHLGASPIIIAAYHGNMDVIEWLVSKGVNINDRNYKGTTVAMYFKDYMLRSGNYTGLENLINLGLDLFLKDNEGLSVFDYMRKNKNIELFNFMSTFN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XD1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -30949 for 2103 contacts (-14.7/contact) +
2D Compatibility (PS) -31444 + (NN) -1690 + (LL) -96
1D Compatibility (HY) -17600 + (ID) 2900
Total energy: -84679.0 ( -40.27 by residue)
QMean score : 0.273
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