Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKYSAIPTPCYALESERLEKN-AKILEIVRQQSGAKVLLALKGYAFWREFGI-LRQKL-NGCCASGLYEAKLAFEEFGGRESHKEICVYSPAFKEAEMSAILPLATSIIFNSFHQYATYKDRILDKNKQLENLGLSPIKMGLRINPLYSEVTPAIYNPCSKMSRLGITPSGFEKGVKEHGLEGV-SGLHFH-THCEQNADALCRT-LEHVERHFKPYLENMAWVNFGGGHHITRSDYDVNLLIQTIKDFKERYHNTEVILEPGEAIGWQCGFLIASVIDIVQNDQEIAILDASFSAH-MPDCLEMPYRPSILKVSVENDEEIIEVEKGENQGAFSYF-LGGPTCLAGDFMGSFSFETPLKRGDKIVFQDMLHYT-IVKNNSFNGVP-LPSLAKIDSQGFKILKSFSYEDYKNRN- |
3MT1 Chain:A ((2-365)) | ------IETPYYLIDKAKLTRNMERIAH-VREKSGAKALLALKCFATWSVFDLMRD--YMDGTTSSSLFEVRLGRERFGK-----ETHAYSVAYGDNEIDEVVSHADKIIFNSISQLERFADKA------------AGIARGLRLNP----------------QRLGEWD--------VPKVERVMDRINGFMIHNNNKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRY-GVQIYLEPGEASITKSTTLEVTVLDTLYNGKNLAIVDSSIEAHMLDLLIYRETAKVL---------------PNEGS---HSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMV-KKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MT1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -204336 for 2678 contacts (-76.3/contact) +
2D Compatibility (PS) -36010 + (NN) -9566 + (LL) 4916
1D Compatibility (HY) -22400 + (ID) 5800
Total energy: -273196.0 ( -102.01 by residue)
QMean score : 0.483
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