Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAYNPKILQKPKEGEEITIKDGK-LHV--PNYPIIPFIEGDGIGSDITPAMIKVVDSAVQKAYKGEKKIAWYEVF-VGEKCYQKFKDHKELSPEEQWLLPDTIEAINHYKVSIKGPLTTPIGEGFRSLNVALRQKMDLYVCLRPVRWYGS-PSPVKEPQKVDMVIFRENSEDIYAGIEWQEGSAEAKKLIHFLQNELKVEKIRFPESSGVGIKPISKEGTERLVRKAIEYAIDNDKPSVTFVHKGNIMKYTEGAFMKWGYALAQKEFNAQVIDKGPWCSLKNPKTGKEIIIKDMIADAFLQQILLRPSEYSVIATMNLNGDYISDALAAMVGGIGIAPGANLNDTVGMFEATHGTAPKYAGLDKVNPGSIILSAEMMLRHMGWVEAADLIVSAMEKAIKSKKV-TYDFARLMDGAKEVKCSEFASVMIENM |
| 2D1C Chain:B ((4-355)) | ----------------ITTETGKKMHVLEDGRKLITVIPGDGIGPECVEATLKVLEAA--------KAPLAYEVREAGASVFRR--GIASGVPQE------TIESIRKTRVVLKGPLETPVGYGEKSANVTLRKLFETYANVRPVREFPNVPTPYAG-RGIDLVVVRENVEDLYAGIEHMQTPSVAQTL-----------------------KLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVH--------------------IIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEGRVLTGDVVGYDRGA---KTTEYTEAIIQNL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2D1C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165200 for 3037 contacts (-54.4/contact) +
2D Compatibility (PS) -38191 + (NN) -19344 + (LL) 4716
1D Compatibility (HY) -22400 + (ID) 6950
Total energy: -247369.0 ( -81.45 by residue)
QMean score : 0.528
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