Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFGKSSNDTQENPKDALKSTNFHEKHTKPTETTELVEENKALTTEKERLERENKNLTADKENLTKEKTELQKQVNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTDKTDLTEKNQRLTTEKTELNNKITGLATEKERLAADKENLTKESRQRKPN
1NYH Chain:A ((1271-1346))
-------------------------------------------------------------------------------------------------LSFVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKLME-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1NYH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 29142 for 302 contacts (96.5/contact) +
2D Compatibility (PS) -8345 + (NN) -6226 + (LL) 9108
1D Compatibility (HY) -3600 + (ID) 750
Total energy: 19329.0 ( 64.00 by residue)
QMean score : 0.785
(partial model without unconserved sides chains):
PDB file :
Tito_1NYH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NYH-query.scw
PDB file :
Tito_Scwrl_1NYH.pdb
: