Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MKKSVIVGAISLAMTSLLSAETPKQEKAIKTSPTKKGERNAAFIGIDYQLGMLSTTAQNCSHGNCNGNQSGAYGSNTPNMPTASNPTGGLTHGALGTRGYKGLSNQQYAINGFGFVVGYKHFFKKAPQFGMRYYGFFDFASSYYKYYTYNDYGMRDARKGSQSFMFGYGAGTDVLF--NPAIFNRENLHFGFFLGVAIGGTSWGPTNYYFKDLAEEYRGSFHPSNFQVLVNGGIRLGTKHQGFEIGLKIQTIRN--NYYTASADNVPEGTTYRFTFHRPYAFYWRYIVSF 1NKS Chain:A ((1-194)) MKIGIVTGIPGVGKSTVLAKVKEILDN-----------QGINNKIINYGDFMLATALKL----------------GYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEARA-GGEGYLFIDTHAVIRTPS------GYLPGLP--------------------SYVITEINPSVIFLLEADPKIILSRQKR----------DTTRNRNDYSDESVILETINFARYAATASAVLAGS-------------TVKVIVNVEGDPSIAANEIIRSMK-------------------

General information: TITO was launched using: RESULT: Template: 1NKS.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output 3D Compatibility (PKB) -44414 for 1451 contacts (-30.6/contact) + 2D Compatibility (PS) -20303 + (NN) -1472 + (LL) 4288 1D Compatibility (HY) -2000 + (ID) 1450 Total energy: -65351.0 ( -45.04 by residue) QMean score : 0.114

(partial model without unconserved sides chains): PDB file : Tito_1NKS.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1NKS-query.scw PDB file : Tito_Scwrl_1NKS.pdb: