Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFEKWIGLTLLLSSLGYPCQKVSISFKQYENLIHIHQKGCNNEVVCRTLISIALLESSLGLNNKREKSLKDTSYSMFHITLNTAKKFYPTYSKT-LLKTKLLNDVGFAIQLAKQILKENFDYYHQKHPNKSVYQLVEMAIGAYNGGMKHNPNGAYMKKFRCIYSQVRYNE
1QSA Chain:A ((459-558))
------------------------------------RYTSGKEIPQSYAMAIARQESAWNPKVKSP----VGASGLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNINIGTSYLQYVYQ----QFGNN----R-IFSSAAYNAGPGRVRTWLGNSAGRIDAVAFVESI
General information:
TITO was launched using:
RESULT:
Template:
1QSA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35052 for 734 contacts (-47.8/contact) +
2D Compatibility (PS) -10606 + (NN) -3831 + (LL) 4228
1D Compatibility (HY) -400 + (ID) 950
Total energy: -46611.0 ( -63.50 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_1QSA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QSA-query.scw
PDB file :
Tito_Scwrl_1QSA.pdb
: