Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPNHQNMLDNQTILITGGTGSFGKRFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN------DPRMRFFIGDVRDLE--RLNYALEGVDICIHAAALKHVPIAEYN---PLECIKTNIMGASNVINACLKNEISQVIALSTDKAANPINLYGATKLCSDKLFVSANNFKGPSQTQFGVVRYGNVVGSRGSVVPFFKKLVQNKASEIPITDIRMTRFWITLDEGVSFVLKSLKRMHGGEIF--VPKIP--SMKMIDLAKALAPNIPTK--------------------------IIG-IRPGEKLHEVMIPKDESHLALEFEDFFIIQPTISFQTPKDYTLTKLHEKGQKVAPDFEYSSHTNNQWLEPDDLLKLL |
| 3PVZ Chain:A ((28-345)) | --ELQSVVSQSRFLVLGGAGSIGQAVTKEIFK-RNPQKLHVVDISENNMVELVRDIRSSFGYINGDFQTFALDIGSIEYDAFIKADGQYDYVLNLSALKHVR-SEKDPFTLMRMIDVNVFNTDKTIQQSIDAGAKKYFCVSTDKAANPVNMMGASKRIMEMFLMRKS-----EEIAISTARFANVAFSDGSLLHGFNQRIQKN-QPI-VAPNDIKRYFVTPQESGELCLMSCIFGENRDIFFPKLSEALHLISFADIAVKYLKQLGYEPHLCESEDEARELAKTLPAQGKWPCLFTSS---------EFFTDKETLDMARFDNLGIIKNDSLYQQELLELFEQKIGQMKTDRQWTKEEIVQLFFIMIPDF----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PVZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -154976 for 2092 contacts (-74.1/contact) +
2D Compatibility (PS) -28763 + (NN) -12657 + (LL) 1096
1D Compatibility (HY) -17200 + (ID) 3000
Total energy: -215500.0 ( -103.01 by residue)
QMean score : 0.356
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