Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIKACYQNAQALLEGHFLLS----SGFHSNYYLQSAKVLEDPKLAEQLALELAKQIQEAHLNIECVCSPAIGGILAGYELARALGVRFIFTERV---DNT------------------MTLRRGFEVKKNEKILVCEDIITTGKSAMECAKVLEEKGAQIVAFGALANRGICKRAHSHLKAQEGACLP-------SHLPLFALEDFVFDMHKPSSCPLCATSVAIKPGSRGN
1QB7 Chain:A ((23-219))
--------------KKSYRWYSPVFSPRNVPRFADVSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLMRKADKNAGLLIRSEPYEKEYKEAAPEVMTIRYG-SIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSILSIPFL---------KAAEKIHSTANSRYKDIKFISLLSDDALTEE--NCGDSKNYTGPRVLSCGD
General information:
TITO was launched using:
RESULT:
Template:
1QB7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107230 for 1251 contacts (-85.7/contact) +
2D Compatibility (PS) -17830 + (NN) -2016 + (LL) 2208
1D Compatibility (HY) -8000 + (ID) 1200
Total energy: -134068.0 ( -107.17 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_1QB7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QB7-query.scw
PDB file :
Tito_Scwrl_1QB7.pdb
: