Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGFLFEKSLMGFCAHSIKIIKVTGLILSFLAAFLVAEDTHEPEEIKAKVAYVKIPQLEDLENTPVYIGQTIGVTYDLLLFDAEFLEAKIKDGWDKTQIELLNKMPKWKKVEKELFRATYYYKIKGIRASIPSLEVSAFSNKDKYIDHSIAPKVALQVTDLSKNPRYANVMAKDLQVVQYKTKDYDDKNNILVMELAFKEANWEDFHVKEAIKQGFDNASLNQIKAKEGSVFYYCVLPKTLQNLSFDYFSLSNRQFKTLSFSAIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLALFFIFGRKLIFLGLGILC----LGFVLYNLLFTQKSALLL---AHKKIRILPTQNSTILGLSRDEMPIKILGSHDDY---YKILTPHEQIGWVKKDEVK-- |
| 4KRT Chain:A ((7-353)) | ---HHHHHMQSRNNNN-----LKGIDVSNWKGNINFESVKNDG---VEVVYIKATEGNYFKDKYAKQNYEGAKEQGLSVGFYHFFRAN--KGAKDQANFFIDYLNEIGAVNYDCKLALDIETTEGVGVRDLTSMCIEFLEEVKRLTGK--EVVVYTYTSFANNNLDSRLGNYPVWIAHYGVNTPG-ANNIWSSWVGFQYSENGSV---AGVNGGCDMNEFTEEIFIDSS------------NFNLDNATTKNVS-TKLNIRAKGTTNSKII--GSIPAGE------------------TFKIKWVDEDYLGWYYVEYNGVVGYVNADYVEKLQMATTYNVSTFLNVREEGSLNSRIVDKINSGDIFRIDWVDSDFIGWYRITTKNGKVGFVNAEFVKKL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KRT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -82345 for 2617 contacts (-31.5/contact) +
2D Compatibility (PS) -33938 + (NN) 11841 + (LL) 5912
1D Compatibility (HY) -5600 + (ID) 2750
Total energy: -106880.0 ( -40.84 by residue)
QMean score : 0.074
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