Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLPVFICEDNRMQRERLTKYIEDYIMVEHFDMKLELSTGDPFELVSRMPTHQGM-GLYFLDIDLGQPDMNGFELAQEIRKFDPRGFIIFITTHAEL--SYMTFTYKVEALDYIIKDDIDL-LHDRVLACMKQAEERISNDQDMQKYFTFKVSDKKIIHELLDDILFFETAPTIHKVILHGKNRQVEFYGKLKNIEKMLDESFYRCHRSYIVNKKNIHELDTTKGVVKMSNGENCYASSKLIKSLSL
2PL1 Chain:A ((1-116))
-MRVLVVEDNALLRHHLKVQIQDA----GHQVDDAEDAKEADYYLN-----EHIPDIAIVDLGL--PDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLS--AGADDYVTKPFHIEEVMARMQALM--------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2PL1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89208 for 849 contacts (-105.1/contact) +
2D Compatibility (PS) -12077 + (NN) -4917 + (LL) 9804
1D Compatibility (HY) -6400 + (ID) 1250
Total energy: -104048.0 ( -122.55 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_2PL1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PL1-query.scw
PDB file :
Tito_Scwrl_2PL1.pdb
: