Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKTIEMDGTTYDFTYEDLVWSITFPKSKTRAKEL-AQLELLEKPATHFTPAKISSDSDSYTISYEIAPRTYGFEQVRKMGREDKLRALRNIADLGELLNTRYTFFLHPDNLIFDINLVPSIVHRGIKNILPPYELTEETFFKQYQCFVIAMFSKKFSFENLYNGSLSG-ARGTQFEKSILDAKTVQDIATILEEAYMKEHAAVQKNMASVPKKKYSTFRGLAVGFIIVAILLAIPVSYFAFVKVPLQNDLLTANENFLKTDYDKVITGLENVDPEKMPQSVQYELAYSYVKGEKMSDKKKENIMNTISLKSDAKNLLYWIYNGRGEFSKSLDIAKLLDDPTLAMYSLTKQIEQVQSDTTLSGDEKVEKLKTLEESLKEYDEKVNESTTTEDETTNTEAK |
4F3V Chain:A ((1-275)) | GHMTDRLASLFESAVSM-------LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS-MSTLNARIAIGGLYGD-ITYPV-TSPLAITMGFAACEAAQG---------------------------NYADAMEALEAAPVAGSEHLVAWMKAVVYGA-AERWTDVIDQV---------KSAGKWPDKFLAGAAGVAHGVAAANLAL-----------------------------FTEAERRLTEANDSPAGEACARAIAWYLA----MARRSQGN-------ESAAVALLEWLQTTHPE----PKVAAALKDPSYRLKTTT------------------------AEQIASRADPWDPGSVV---------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4F3V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -56104 for 2281 contacts (-24.6/contact) +
2D Compatibility (PS) -28472 + (NN) -2968 + (LL) 10184
1D Compatibility (HY) -4800 + (ID) 2100
Total energy: -84260.0 ( -36.94 by residue)
QMean score : 0.197
|
|
|