Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKERTTMMSNLKKFGLAFLSVILLVNVIFQTNFVKAATNYGSDFLKTVELLDADGNPQTDFGYYDSIKVHYTWEIPNSTNVKEGDTMEFVLPPELKIVTDLDFSLKDHDGNTVGHVIAKKSTGQVVITFTDFVEKNSNISGYLDFWTNWDKSLVEGNENVPVEFPVNGTTETIDVGVGGKNQIDPDESLYKYGWADAENPELIQWVVRVNYSKQ--NIQNAVYEDFIGPKQVVDFNSIKAFHGEFDPDDNFTPGAEVPSSAIT----QTTDGFKVDLGNL------------------------------TDSVKISYYTTSTDN-GASPNYTNKGQLTGDNFIKQEIEVATPTSGGGGGGEGTTGSVELTKTDDSSQKNPLEGAEFKLVNGAGATVQ------------------------TGLKTNADGKLAISNLKYD----------TYQLIETKAPQGYVLDASPVKFTIDDTHQSLFVSKENTAIKGSVSLEKVDRDTKSLLADAEFELQDKDGNTLKTNLKTDQKGKLTVADLLPGEYQFVETKAPTGYILDTTPLKFKISTEALNVTVTKENTKKPEIPKVPVPPKKPEKPDKIISEDSKQTALPKTGDSPLVNGWGLLLVAISASGLIALRRK |
3PF2 Chain:A ((24-294)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TIGEEFKWFLKSTIPANLGDYEKFEITDKFADGLTYKSVGKIKIGSK-TLNR----DE---HYTIDEPTVDNQNTLKITFKPEKFKEIAELLKGMTLVKNQDALDKATANTDDAAFLEIPVASTINEKAVLGKAIENTFELQYDHTPDKADNPK--PSNPPRKPEVHTGGKRFVKKDST-ETQTLGGAEFDLLASDGTAVKWTDALIKANTNKNYIAGEAVTGQPIKLKSHTDGTFEIKGLAYAVDANAEGTAVTYKLKETKAPEGYVIPDKEIEFTVSQTS------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 20999 for 1318 contacts (15.9/contact) +
2D Compatibility (PS) -21226 + (NN) -7251 + (LL) 19912
1D Compatibility (HY) -9200 + (ID) 2250
Total energy: 984.0 ( 0.75 by residue)
QMean score : 0.393
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