Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKFTKLMQGYLHLIEGKNEKIKPILLETKPNFTTDSVLETASWLWLSSKINHYDREEVEPVIAFLVENWNRPEKSIWGSAENDIYLATISSVYSALLDVKNTFPKPELQQTITIIRDYCFDNLLKGDSILTGFNTRKVSTDQLLSVLPFGLFSPEDLVMVAAVGKMEQQLVQDDGVLPYSGAPRVNSFATALMALYFLEKSDQDKALHYLNMAMKMEDNDELGAIFIEINQAFRAMESEVTAHISHDPFGHENRYEQQLTERTPHYPETEMHFSAACEVISEVEPIQVELVLKEKDWTILCEKKEKNDVQIWEALVPPLEEVGEYTYYFQATMKDQTTLTSDDYKVEPIWKHWSEEAAICETEQGLMVLFKENPSSIIPVEFTVKSDELVIGLKPSFEASNVKTKSSGQLKKDDLEIIVSNNPVRLEVHFKGKLILESHKIYPALQWYTDKTGTINKVKLHLDAPKEEEYYGFGERYNALGQRGNVLDCFVYNQYRDQGTRTYIPMPFYHTNRDYSVFVDTARYTSFDLGNQLADKHTITVEINGCDTDICLLMG-DIRSAVANYMKKTGKPAMVPVWALGPWMSSNNWDR--ESVVRNEVETTQELQIPSTVVVLEQWSDEATYYMFNDAEYDEKAPSEAYSYDEIRFPSWGRWPDPKGMVDYIHDNKMKLILWQIPIQKYLNRQQHPLKDREEAYMIEKGYVVKNPDGSPYRIPENWFTESLIMDFSNEEGKKWWFDKRQYLIDIGVDGFKTDGGEFVFGEGLQFADGRRGDEMRNLYPNDYVEAYYQFAQQ----NEGMTFSRAGYTGAQNFPAHWAGDERSTFDAFRRSLIAGLSAGFSGIPFWSFDFAGFNGDIPTAELFIRSAEMATFCPIMQYHAESKAEFNQDRTPWNIASRTGDDSVIPIYRHFANVRMNILPYIYNESLKCVETGLPMMRALLLDYKEDPRVSDMYDQYLFGEAMLIAPVIEDGVRSREVYLPEGTWYDFWNGTKVSGPTLRKCKADKEEIPVFVRGGKAVLCNVDATLKLGSWVGNTVEEYDTPLLKVYLDGDFTEEITDHLF-----GKWLVKVTENADEVIVSVQTNTASYEVEVIGTTKKVQIKKGR---------------------- |
| 1XSJ Chain:A ((1-773)) | ----MKISDGNWLIQPG------------------------------------LNLIHPLQVFEVEQQD----------------NEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQE---------------------------------------------------------------------------------------------------------GIVGVRIEHFQGALNNGPHYPLNILQ-------------------------------------------------------------------------------------DVKVTIENT------------------------------------ERYAEFKSGNLSARVS-------------------------KGEFWSLDFLRNGERITGSQV--KNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQ-AYKNIPFYMTNRGYGVLVNHPQCVSFEVGSE--KVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHF-------------DCFWMKAFQWCDFEWDP------LTFPDPEGMIRRLKAKGLKICVWINPYIGQ--------KSPVFKELQEKGYLLKRPDGSLWQ-WDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERI-PTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENT-APAHVYKRWCAFGLLSSHSRLHGS-----KSYRVPWAY-----DDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEA-GDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDN--------TLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITLH |
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General information:
TITO was launched using:
| RESULT:
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Template: 1XSJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -258974 for 6619 contacts (-39.1/contact) +
2D Compatibility (PS) -79269 + (NN) -23358 + (LL) 26908
1D Compatibility (HY) -37600 + (ID) 8950
Total energy: -381243.0 ( -57.60 by residue)
QMean score : 0.420
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