Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTRLKEDIATIIKNDPATKSFFDAFLTNPGLHALWWHRVANFFYRHKMVLFGKVLSQNARFWTNIEIHPGATIGRRLFIDHGAGIVIGETAEIGDDVTIFHGVTLGGTGKDCGKRHPTVGDGALVSAGAKVLGPVEIGAGARIGAGAVVLKDVPPGATVVGIPAKVVRLNGRTVGHAVPKMDELTLRIAELENIVEKLLKEKE
3GVD Chain:J ((80-247))
MIVSAARDILAVRLRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWAQDRKALAIYLQNQVSVAFGVDIHPAATIGCGIMLDHATGIVIGETAVVENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQSVPAHTTAAGVPARIV------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114491 for 1380 contacts (-83.0/contact) +
2D Compatibility (PS) -18152 + (NN) -9151 + (LL) 3144
1D Compatibility (HY) -13600 + (ID) 3500
Total energy: -155750.0 ( -112.86 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_3GVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GVD-query.scw
PDB file :
Tito_Scwrl_3GVD.pdb
: