Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMVEKRAEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL---
3P8B Chain:B ((2-148))
-AGKIFAVRVTHGQEETTAKLIYSKVRTYNL--PIYAILAPSR-----------------VKGYIFVEAPNKGVVDEAIRGIRHARGV--------LPGEVPFKEIEHFLE-----EKPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISKL
General information:
TITO was launched using:
RESULT:
Template:
3P8B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66309 for 996 contacts (-66.6/contact) +
2D Compatibility (PS) -15850 + (NN) -7599 + (LL) 1472
1D Compatibility (HY) -5200 + (ID) 1600
Total energy: -95086.0 ( -95.47 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_3P8B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P8B-query.scw
PDB file :
Tito_Scwrl_3P8B.pdb
: