Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LITHVIWDMGETLNTVPNTRYDHYPLDTYPEVVLRKDAKETLEKVKQLGFKQAILSN------------TATSDTEVIKRVLTNFGI-IDYFDFI-----YASNSELQPGKMEKPDKTIFDFTLNELQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERQPLVAPPFVIPVWDLADVPEALLLLKKISS
2GMW Chain:A ((24-205))
SVPAIFLDRDGTINV------DHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDK-LEDMQAAVAANVGTKVLVRT----GKPITPEAENAADWVLNSLADLPQAIKK------
General information:
TITO was launched using:
RESULT:
Template:
2GMW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61856 for 1343 contacts (-46.1/contact) +
2D Compatibility (PS) -17141 + (NN) -6207 + (LL) 1328
1D Compatibility (HY) -8000 + (ID) 1600
Total energy: -93476.0 ( -69.60 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_2GMW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GMW-query.scw
PDB file :
Tito_Scwrl_2GMW.pdb
: