Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKGLKKM-KYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQTGK-ANPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDC-IVGANIQQVLSSKYELL-QQKIELEMDEIKLDSIIHDISVLESKDRPQNNEFIT-KFL
3LWF Chain:A ((16-159))
---YFQGMKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDIIRTLEG--------PIVLVESMED----EEAAQRELWTRMRNAVRDVLDQTTLSDLLK-------HSTDSELTDGYMFYI
General information:
TITO was launched using:
RESULT:
Template:
3LWF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50856 for 894 contacts (-56.9/contact) +
2D Compatibility (PS) -14542 + (NN) -3742 + (LL) 1140
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -70500.0 ( -78.86 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_3LWF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LWF-query.scw
PDB file :
Tito_Scwrl_3LWF.pdb
: