Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMDGLEALAQIMAKD--PSAKVIMCSAMGQQGMVVDAIKKGAKDFIVKPFQADRVLEALEKAAK
1F4V Chain:A ((5-121))
-LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNK---
General information:
TITO was launched using:
RESULT:
Template:
1F4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65095 for 898 contacts (-72.5/contact) +
2D Compatibility (PS) -12570 + (NN) -9245 + (LL) 560
1D Compatibility (HY) -10000 + (ID) 2200
Total energy: -98550.0 ( -109.74 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_1F4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F4V-query.scw
PDB file :
Tito_Scwrl_1F4V.pdb
: