Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVGNNIAKSYP-NKLVLQNVDFEAKSGDMIVLTGENGSGKTTLLDMLASLKKPDSGTLELDNELFT-----TNDIRQQIAYLNNELY-AKKSTTIEDFMKQHGLLFE---NIELDKWDRLLAGWRIN--KRLKLGELSTGMLMKVKIGSVLARKAKLYLYDEPFASIDIMARSEVMKAIISETN-PDAITIISSHHLEGTEKLYSKLWLIKDNTLQTIE-TETYREETGNALIDFYKEEMNK
3GFO Chain:A ((7-236))
ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE-------------
General information:
TITO was launched using:
RESULT:
Template:
3GFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105831 for 1712 contacts (-61.8/contact) +
2D Compatibility (PS) -22830 + (NN) -6417 + (LL) 1056
1D Compatibility (HY) -11600 + (ID) 2400
Total energy: -148022.0 ( -86.46 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_3GFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFO-query.scw
PDB file :
Tito_Scwrl_3GFO.pdb
: