Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LNLKDTVKLANGVEMPRLGFGVWKVQDGDEAVNSVKWAIEAGYISIDTAAAYKNEEGVGQAIKES-----GIKREDLFVTTKLWNAEQGYESTLAAFDESLRKLELDYVDLYLIHWPV-----------------KGKFKDTWRAFEKLYKDKRVRAIGVCNFHEHHLKELMEDAEIAPMVNQIELHPQLTQEPLRKFCAENNIVVEAWSPLGNGK-----LLSNPEIKAIADAHGKSVAQVILRWDLQIGVVTIPKSVHQERIIQNADIFDFELTEEEVAKISGLNKDERTGPDPDNFNF |
4GAC Chain:B ((3-303)) | ----SSVLLHTGQKMPLIGLGTWKSEPG-QVKAAIKHALSAGYRHIDCASVYGNETEIGEALKESVGSGKAVPREELFVTSKLWNTKHHPEDVEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKGTVRYDSTHYKETWKALEVLVAKGLVKALGLSNFNSRQIDDVLSVASVRPAVLQVECHPYLAQNELIAHCHARGLEVTAYSPLG---PDEPVLLEEPVVLALAEKHGRSPAQILLRWQVQRKVICIPKSINPSRILQNIQVFDFTFSPEEMKQLDALNKNWR---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GAC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -135438 for 2170 contacts (-62.4/contact) +
2D Compatibility (PS) -28224 + (NN) -10829 + (LL) -376
1D Compatibility (HY) -24800 + (ID) 5450
Total energy: -205117.0 ( -94.52 by residue)
QMean score : 0.596
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