Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MKNILLICGSG-ASSGFMAAAIRKAAKKRG-EQVTVKAASESQIDERINEIDYLLIGPHLAYMLDDLKQKVADKDVLVSIIPQATYGTLNGEKALDLILNMEG----
1VKR Chain:A ((375-471))
SHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNLPP----------DVDLVITHRDLTERAMRQVPQAQHISLTNF--LDSGLYTSLTERLVAAQRH
General information:
TITO was launched using:
RESULT:
Template:
1VKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49007 for 640 contacts (-76.6/contact) +
2D Compatibility (PS) -9997 + (NN) -5944 + (LL) 984
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -67214.0 ( -105.02 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_1VKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKR-query.scw
PDB file :
Tito_Scwrl_1VKR.pdb
: