Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELKHVIPNMEKTFGQLEFAGEGKVEQRRINGKPTILSRSYNLYSNIQRADDIVVILPAEAGEKHFEIEQKVKLVNPRITAEGYKIGTRGFTNYVMYADDIVKV--
4GGT Chain:A ((10-115))
LPAPSYWKNERGSELLIWSANSGTIQGTFTNHAQG-FACQGIPYPAAGSVSPTGLYFVVTFAQCNSFTRWVGTIKGSQMPTSWTLFYVNKGKPSRLKGGDIFTRVW
General information:
TITO was launched using:
RESULT:
Template:
4GGT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9101 for 730 contacts (-12.5/contact) +
2D Compatibility (PS) -10955 + (NN) 526 + (LL) 204
1D Compatibility (HY) 1600 + (ID) 350
Total energy: -18076.0 ( -24.76 by residue)
QMean score : 0.029
(partial model without unconserved sides chains):
PDB file :
Tito_4GGT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GGT-query.scw
PDB file :
Tito_Scwrl_4GGT.pdb
: