Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELTKENFQKLDLIHLSLENRHSMSEIIDILSESYIEITQSGVVK-DYAYYKSLTTLG---DS-NLAIMEYD-VKILDETKVLSYYKLKNLSENNYTMRSNIWIFE-NGSWKLTFHQGTRII
2GXF Chain:A ((2-123))
----EQQLKDIISACDLAIQNEDFDTLMNYYSEDAVLVVKPGMIARGKEEIKKAFITIANYFNHHIVPTQGKMILLEAGDTVLVLSQTLLD---MERRATYVFKKNAQGEWLCVIDNSYG--
General information:
TITO was launched using:
RESULT:
Template:
2GXF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16636 for 674 contacts (-24.7/contact) +
2D Compatibility (PS) -11470 + (NN) -1751 + (LL) 944
1D Compatibility (HY) -1200 + (ID) 400
Total energy: -30513.0 ( -45.27 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_2GXF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GXF-query.scw
PDB file :
Tito_Scwrl_2GXF.pdb
: