Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LTTIIAFIFVFGLIVFFHELGHFLFAKRAGIMVKDFSIGFGPKIFAYRKKETQYTIRLLPIGGYVRMAGEDGEEIELKPGYRVGLELTPEETVSKIIVNGKDQYVNAQPIEVSLCDLEKELFIEGYEDYDDTKKVRYQVERDALVIDGKIETMITPYDRSFNAKSLGNRAMTIFAGPLFNFILAILIFTALAFVQGGVPSTDNT------LGNVLPDGAAAEAG-LKKGDEVLSINGKETKSWTD--IVQNVSENPGKTLDFKIERDGKTQDIDVKPATQKENGKDVGKIGVETPMDSSFTAKITNGFTQTWNWIVQIFTILGNMFTGGFSLDMLNGPVGIYTSTQQVVQYGFMTVLNWTAVLSINLGIVNLLPLPALDGGRLMFFLYELVRGKPIDPKKEGIIHFAGFALLMVLMILVTWNDIQRAFF |
| 1IHJ Chain:A ((20-96)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-----ADFKIELEIQTF-------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1IHJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -6648 for 368 contacts (-18.1/contact) +
2D Compatibility (PS) -7075 + (NN) -1745 + (LL) 25100
1D Compatibility (HY) -5600 + (ID) 1300
Total energy: 2732.0 ( 7.42 by residue)
QMean score : 0.498
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