Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKKVIVACGSGVATSQTVASKVERILKEKGVRATVEAVDIKSLEQHI-KTSDVYVAITKANKEFD-----------IPT-LNG-IAFLTGMGMDEETEKLLNALK
3NBM Chain:A ((5-108))
KELKVLVLCAGSGTSAQ-LANAINEGANLTEVRVIANSGAYGAHYD-IMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHYQ
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39740 for 676 contacts (-58.8/contact) +
2D Compatibility (PS) -9712 + (NN) -2947 + (LL) 96
1D Compatibility (HY) -1200 + (ID) 600
Total energy: -54103.0 ( -80.03 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: