Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKMAVISLVLLLFLVGCGKEEAAQKPEQKTDKEPKIVATTVAITEIMDKLDLPLVGIPSSSKKLPKRYADVKETGSPMGPDLEIIRMLKPDMVLSTKTL-EADLKSGFEGADLEADFLDFTSIASMQTEIKNLGAKFDRIEEATKLNKDLTSDIDQVKSNVAKKKKPTVLILMGVPGSYLVVTEHAYIGDLVKLAGGENVIKDQKVEYLASNTEYLQSANPDIILRAAHGMPAEVVKMFDEEFKTNDIWKHFDAVKNNRVYDLDENLFGMTASLNAPEALKEMEKMLYDN- |
1N2Z Chain:A ((1-245)) | --------------------------------AAPRVITLSPANTELAFAAGITPVGVSSYSDY-PPQAQKIEQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQPDKAEQAAQSLLDQYAQLKAQYADKPKKRVFLQFG-INPPFTSGKESIQNQVLEVCGGENIFKDSRVPWPQVSREQVLARSPQAIVIT------------GGPDQIPKIKQYWGEQLKIPVIPLTSDWFE-RASPRIILAAQQLCNALSQVD |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1N2Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -89100 for 1981 contacts (-45.0/contact) +
2D Compatibility (PS) -26138 + (NN) -12561 + (LL) 4764
1D Compatibility (HY) -8000 + (ID) 2500
Total energy: -133535.0 ( -67.41 by residue)
QMean score : 0.463
|
|
|