Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LSQFDEVIPRIGTNSEKWD--GAEELFGRKDIIPMWVADMDFRAPKPVLDAFQRQIDHGIFGYSTKSKALVEAVIDWNKEQHQFEIDPSTLFFNGAVVPTISLAIRSLTNEGDAVLMVSPIYPPFFNVTKATERKVVMSPLIYENRQYRMDFNDLEKRMKEENVKLFLLCNPQNPGGRCFTKEELVELAKLCEKYQIPIVSDEIHADLVMKNHKHVPMMVAAPFYQDQIITLMAATKTFNLAAIKASYYIITNKDYQTRFAAEQKYATTNGLNVFGIVGTEAAYRHGAPWLKELKEYIYSNYEYVKAELEKEVPEVGVTDLEATYLMWLDCRALPKDEKTIYTDLI-EAGVGVQMGSGFGHSGKGFVRFNIACPKETLEKSVKLLIQGLKK |
| 1C7N Chain:E ((5-391)) | ---FTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1C7N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -238278 for 3287 contacts (-72.5/contact) +
2D Compatibility (PS) -41170 + (NN) -12536 + (LL) 332
1D Compatibility (HY) -27200 + (ID) 6300
Total energy: -325152.0 ( -98.92 by residue)
QMean score : 0.615
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