Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------MKNIVLVCAAGMSTSLLV-TKMRKAAEERGETCEIEAYSIAEVSNLIDDADVVLLGPQVRYQKKTVDELAAGKIPVDVIDMAAYGTMNGEKVLGQALDLINGFQK
1TVM Chain:A ((1-113))
MGSSHHHHHHHHENLYFQGSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVDRSF--------GDIPLVHG-MPFVSGVGIEALQNKILTILQG---
General information:
TITO was launched using:
RESULT:
Template:
1TVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61663 for 581 contacts (-106.1/contact) +
2D Compatibility (PS) -10036 + (NN) -2906 + (LL) 1040
1D Compatibility (HY) -7200 + (ID) 750
Total energy: -81515.0 ( -140.30 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_1TVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TVM-query.scw
PDB file :
Tito_Scwrl_1TVM.pdb
: