Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VIFIEVMKERFGEFE---GETVWKWTMINDHDMRMSVLNYGAIVTSLETKDKFGDFANISLGFTNLDDYLAHSPYFGATLGPVAGRITNGQFSLDGKQFQLIQNEGSNHRHGGKFNFSKKLWDVSVEKSLDQIVMTFEYCWADGENGYPGKIDAKMTYTLNNKNEWLVDYEARSNQPTIYNPSNHIYFNLSGEAGSTVLQHQLWVNSDSFLPIDEEFLPIGEKRLAE--NTIFDLRAGREVAEITQSQDQQVKLVGAGLDHTFILKHENGRPDAVLFDPKSGRRLEMETKADSVLIYTANSLDGSFEIDERAVPKYAGITMETQGLVDAINHEGFGDIVLRPEKPFTSRTAFRFTVES |
3IMH Chain:B ((3-329)) | ------LKTNFVKYERKDNKDLCEITLENDAGMAVKVLNYGATLEKV-----LLDGENMILSLNSPEDYSKERNFLGGTVGRIAGRVRAGQWKHGNEIHQLPLNDGDNHIHGG-IGTDMHVWDFRPSCDSEHARVDLTLFDPDGNNDYPGNLKLHARYELDNENNLHYLLEAVSDKLTIFNPVNHTYFNLGERAEDLNLQ----MNADYYLPVDEAGLP--DRGMAEVAGTAFDFRKTKRIGDALNSDDSQIKLRN-GLDHPFILNGNN--PAALLSSNK--HRLIVKTNAPALVLYAGNHFNHTGIVNN--IGQYDGITFEAQ--CPPAEGNDLGQITLLPFEKFKRTVDWKF---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IMH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -140065 for 2823 contacts (-49.6/contact) +
2D Compatibility (PS) -34870 + (NN) -10870 + (LL) 2268
1D Compatibility (HY) -22800 + (ID) 5600
Total energy: -211937.0 ( -75.08 by residue)
QMean score : 0.452
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