Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVHVINHPLVQHKLTIIRDKNTGTKAFRELVDEVATLMAYEITRDMELEDIQVETPLQTTTAKTLTGKKLGIVPILRAGLGMQDGILKLIPAAKVGHVGLYRDHDTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRGARNMK--FMCLVAAPEGVKALQDAHPDVEIYVAGLDEKLDENGYIRPGLGDAGDRLFGTK
1UPU Chain:B ((29-223))
---------------MTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT-
General information:
TITO was launched using:
RESULT:
Template:
1UPU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139446 for 1443 contacts (-96.6/contact) +
2D Compatibility (PS) -20722 + (NN) -5292 + (LL) 1388
1D Compatibility (HY) -15200 + (ID) 3400
Total energy: -182672.0 ( -126.59 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_1UPU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UPU-query.scw
PDB file :
Tito_Scwrl_1UPU.pdb
: