Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKT--DVLIISGDLTNNGEKTSHEELAKKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYGDFGYEDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTE-GAMDFSLSGHIHTQNIRS--------AKSTDGKEITDIVTNALSVFPHKYGNITYSAKNKNFTYQSQKLD-----MEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP |
2DXN Chain:A ((1-271)) | ---------------------------------------MLLAHISDTHFRSRGEKLYGFI--------------DVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLN---YPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFAT-----------------------RLLFIDSSR--------AGTSKGWLTDETISWLEA--QLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHEDTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT--------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DXN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -45914 for 2066 contacts (-22.2/contact) +
2D Compatibility (PS) -27252 + (NN) -7275 + (LL) 9120
1D Compatibility (HY) -3600 + (ID) 1650
Total energy: -76571.0 ( -37.06 by residue)
QMean score : 0.348
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