Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRAAVLYENNV-IKAEQIDEATCGKDQVRVEVKAVGICGSDIHKMQTRW----KYPLPAVMGHEFAGVITEIGSEVTNVAMGDRVAGIPLEPCMECNYCKAGDFALCDNYRMVGSHFHGGFAENVVMKADNVISI-GDLDFEEGAMIEPLAVSMHGVLGIQPRLGDTVIVFGIGTIGILVVQCLLLAGVKDIIAVDISDKKLADAREFGCKYTINPKNEDLKERVFAYTNGLGADIALECAGSKITQEQCLLVTKKKGKVGFLGIAYADVLLHEEAFE-NIFRRELTLKGFWNSYSAPFPGEEWRTSIEFVKQGRIKLKPLISHRY-KLEETKEAFDMILSREHDYNKVMILPQKGDD |
| 2D8A Chain:A ((5-347)) | MVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCY------------TKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVL-AGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLL-GLYPGK--VTIDFNNLIIFKALTIYGIT---GR-HLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGK--TGKVVFML----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2D8A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -243419 for 2842 contacts (-85.7/contact) +
2D Compatibility (PS) -34467 + (NN) -7899 + (LL) 140
1D Compatibility (HY) -16000 + (ID) 4750
Total energy: -306395.0 ( -107.81 by residue)
QMean score : 0.457
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