Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTENEQLFWNRVLELSRSQIAPAAYEFFVLEARLLKIEHQTAVITLDNIEMKKLFWEQNLGPVILTAGFEIFNAEITANYVSNDLHLQETSFSNYQQSSNEVNTLPIRKIDSNLKEKYTFANFVQGDENRWAVSASIAVADS-------PGTTYNPLFIWGGPGLGKTHLLNAIGNQVLRDNPNARVLYITAENFINEFVSHIRLDSMEELKEK-F-RNLDLLLIDDIQSLAKKTLG--GTQEEFFNTFNAL---HTNDKQIVLTSDRNPNQLNDLEERLVT--RFSWGLPVNITPPDFETRVAILTNKIQEYPYDFPQDTIEYLAGEFDSN-VRELEGALKNISLVADFKH-AKTITVDIAAEAIRARKNDGPIVTVIPIEEIQIQVGKFYGVTVKEIKATKRTQDIVLARQVAMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMVAQDDNLRIEIETIKNKIR |
| 1IY2 Chain:A ((34-276)) | ------------------------------------------------------------------------------------------------------------------APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-----RVPFITASGSDFVEMFVGVGAA-RVRDLFETAKRHAPCIVFIDEIDAVGRK---NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI---LDPALLRPGRFD--RQIAIDAPDVKGREQILRIHARGKPL-AEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK-ITMKDLEEAAS-------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1IY2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -97274 for 1733 contacts (-56.1/contact) +
2D Compatibility (PS) -23239 + (NN) -9456 + (LL) 17744
1D Compatibility (HY) -12000 + (ID) 2350
Total energy: -126575.0 ( -73.04 by residue)
QMean score : 0.486
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