Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYDSMFQTQVDTIS------GM---HW-----DMKKRQISPQAAGKMMEAIYYQN-------GDIVNYLSKTDFDNTRIPKNIP--VKVAHKIGDA-YDYKHDAAIVYA-E-QPFIMIIFTDKSS------YDDITKIADDVYQVLK |
| 3QHY Chain:A ((29-291)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THKEFSQLEKK--FDARLGVYAIDTGTNQTIAYRPNERFAFASTYKALAAGVLLQQNST--KKLDEVITYTKEDL-------VDYSPVTEK-HVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGP--KGYEKALRQMGDRVTMSDRFETELNEAIPGDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTKWMKGNATGDKLIRAGVPTNWVVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKGATYDNQLIAEAAEVIVNAFR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3QHY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -90616 for 1939 contacts (-46.7/contact) +
2D Compatibility (PS) -24084 + (NN) -6295 + (LL) 13460
1D Compatibility (HY) -2000 + (ID) 2150
Total energy: -111685.0 ( -57.60 by residue)
QMean score : 0.421
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