Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MITQRQNDILNLIVELFTQ--THEPVGSKALQRTIESSSATIRNDMAKLEKLGLLEKAHTSSGRMPSPAGF---KYFVEHSLRLDSIDEQDIYHV----------------IKAFDFEAFKLEDM-----------------LQKASHILSEMTGYTSVIL---DVEPARQRLTGFDVVQLS--------NHDALAVMTLDESKPVTVQFAIPRNFLTRDLIAFKAIVE----------ERLLDGSVMDIHYKLRTEIPQIVQKYFVT-TDNVLQLFDYVFS---ELFLETVFVAGKVNSLTYSD-------------LSTYQFLDNEQQVAISLRQGLKEGEMASVQVADSQEAALADVSVLTHKFLIPY--------RGFGLLSLIGPIDM--------------DYRRSVSLVNIIGKVLAA---------KLGDYYRYLNSNHYEVH------------------------------------------ |
| 2HCN Chain:A ((12-582)) | ----LVNGVVRLLSKPWDTITTKAPEPPEGVKYVLNETTNWLWAFLAREKRPRMCSREEFIRKVNSNAAQWRSAREAVEDPKFWEMVDEEREAHLRGECHTCRAIWFMWLGARFLEFEALGFLNEDHWLGRKNSGGGVEGLGLQKLGYILREVGTRPGGRIYADDTAGWDTRITRADLENEAKVLELLDGEHRRLARAIIELTYRSGQVVTYALNTFTNLAVQLVRMMEGEGVIGPDDVEKLTKGKGPKVRTWLSENGEERLSRMAVSGDDCVVKPLDDRFATSLHFLNAMSKVRKDIQEWKPSTGWYDWQQVPFCSNHFTELIMKDGRTLVTPCRG--QDELVGRARISPNVRDTACLAKSYAQMWLLLYFHRRDLRLMANAICSAV-PVNWVPTGRTTWSIHAGGEWMTTEDMLEVWNRVWIEENEWMEDKTPVEKWSDVPYSGKREDIWCGSLIGTRARATWAENIQVAINQVRSIIGDEKYVDYMSSLK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HCN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89418 for 2295 contacts (-39.0/contact) +
2D Compatibility (PS) -35141 + (NN) -4963 + (LL) 416
1D Compatibility (HY) -9200 + (ID) 2500
Total energy: -140806.0 ( -61.35 by residue)
QMean score : 0.315
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