Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKDRQIQKTKVAIYNAFISLLQ-ENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDLFHHLFKQGR-----DVTFEEYL----VHILKHFEQNQDSIATLLLSD---DPYFLL---RFRSELEHDVYPRLREEYI-T-KVDIPEDFLKQFLLSSFIETLKWWLHQRQKMT------VEDLLKYYLTMVER
3LSJ Chain:A ((5-197))
--RAEQKQQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAEVDETFRATLRAVRRN--ELGGLIDASVRIFLDAVGANRSQFLFLAREQYGGSLPIRQAIASLRQRITDDLAADLALLNKMPHLDGAALDVFADLVVKTVFATLPELIDPPAADLPPHLMPAAKITHQLRFIMIG
General information:
TITO was launched using:
RESULT:
Template:
3LSJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82415 for 1049 contacts (-78.6/contact) +
2D Compatibility (PS) -17563 + (NN) -7472 + (LL) 516
1D Compatibility (HY) -6400 + (ID) 1150
Total energy: -114484.0 ( -109.14 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_3LSJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LSJ-query.scw
PDB file :
Tito_Scwrl_3LSJ.pdb
: