Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQSYSKNANHNMRRPVVKEEIVQYMRQHQKQNNGCLAELEAFAKQ---ENIPIIPHETATYFRFLMQTLQPKHILEIGTAIGFSALLMAENAP-EAKITTIDRNEEMIVLAKENFAKYDNHNQITLLEGDAVDVLQTL-----DKSYDFVFMDSAKSKYIVFLPQVLKHLDVGGVVVLDDIFQGGDIAKPIDEVRRGQRTIYRGLQRLFDSTLRHPDLTATLVPLGDGLLMIRKNAEHIVLED
3TR6 Chain:A ((9-224))
---------------TLLTPELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQ-----SENNQLIRLFNQKVYKDERVDMILIPIGDGLTLARKKS-------
General information:
TITO was launched using:
RESULT:
Template:
3TR6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142196 for 1683 contacts (-84.5/contact) +
2D Compatibility (PS) -23054 + (NN) -16923 + (LL) 2284
1D Compatibility (HY) -12000 + (ID) 2750
Total energy: -194639.0 ( -115.65 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_3TR6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TR6-query.scw
PDB file :
Tito_Scwrl_3TR6.pdb
: