Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEKCPIIALDFSDLASVTTFLEHFPKEELLFVKIGMELYYSEGPSIIRYIKSLGHRIFLDLKLHDIPNTVRSSMSVLAKLGIDMTNVHAAGGVEMMKAAREGLGEGPI----LLAVTQLTSTSQEQ-MQVDQH-INLSVVDSVCHYAQKAQEAGLDGVVASAQEVKQIKKQTNEHFICLTPGIRPPQTNQLDDQKRTMTPEQARIVGADYIVVGRPITKAENPYQAYLEIKEEWNRIK
3LDV Chain:A ((25-254))
MNDPKVIVALDYDNLADALAFVDKID-PSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSMESADLQGIGILSAPQDHVLRLATLT---KNAGLDGVVCSAQEASLLKQHLGREFKLVTPGIRPAG-SEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLEEINSSL----
General information:
TITO was launched using:
RESULT:
Template:
3LDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136172 for 1782 contacts (-76.4/contact) +
2D Compatibility (PS) -23890 + (NN) -9755 + (LL) 732
1D Compatibility (HY) -12800 + (ID) 4450
Total energy: -186335.0 ( -104.57 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_3LDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LDV-query.scw
PDB file :
Tito_Scwrl_3LDV.pdb
: