Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLEERILKDGDVLGENILKVDSFLTHQVDFELMQEIGKVFADKYKE--AGITKVVTIEASGIAPAVYAAQALGVPMIFAKKAKNITMTEGILTAEVYSFTKQVTSQVSIVSRFLSNDDTVLIIDDFLANGQAAKGLLEIIGQAGAKVAGIGIVIEKSFQDGRDLLEKTGVPVTSLARIKAFENGRVVFAEADA
3M3H Chain:A ((60-205))
-----------------------DNRLTLSYPKVRQTIAAGLEELIKEHFPTVEVIAGT---GIAHAAWVSDRMDLPMCYVR------------------------N--QIEGK-AEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKLEAANVASYSLSDYSALTEVAAEKGIIGQ
General information:
TITO was launched using:
RESULT:
Template:
3M3H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111632 for 1036 contacts (-107.8/contact) +
2D Compatibility (PS) -14745 + (NN) -3635 + (LL) 4684
1D Compatibility (HY) -7200 + (ID) 1400
Total energy: -133928.0 ( -129.27 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_3M3H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M3H-query.scw
PDB file :
Tito_Scwrl_3M3H.pdb
: