Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIELKGVNFKYKNTKN--SCLDNIDLEIKKGEFVLISGASGSGKTSITRVINKLIPYYYEGELEGTVKINNDLVSSYQMFELSEI----VGSVFQNPRTQF-----FNVDTNSEIVFGLENQGVSRDILKKRLKETCETLDINKLQNRNIFH----LSGGEKQKIAFASVYAMNPDIYLLDEPSSNLDIPTIEVLKRHLSVL-KNSGKTVIISEHRIYYLMDLVDKVIYMKNGQIQKSYSKEDFLNLSEDEIKAMALRCRKKTKLNIEMSNNEKHPYLQVNDFSIYRKDNCIINNMNFSANKGDIVAVIGSNGVGKTTFLRTLCGLHDNYKGDVLLNSKKTDAKKRRQKNYMVMQDVNYQLFAESVFAECKLGIENVSDDLIEEILNEFDLSDYKNNHPNTLSGGQKQRLAIAVGLICKKEIFVLDEPTSGLDYTNMVKTVELLKRYSKDKIIFIATHDTEFANLICNRVLDLEK |
| 1L2T Chain:A ((1-230)) | MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL-----DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ----QFNLIPLLTALENVELPLIFKYRGAMSG--EERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NVARFGERIIYLKDGEVEREEKLR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1L2T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -77367 for 1713 contacts (-45.2/contact) +
2D Compatibility (PS) -22948 + (NN) -5652 + (LL) 16132
1D Compatibility (HY) -12000 + (ID) 3950
Total energy: -105785.0 ( -61.75 by residue)
QMean score : 0.435
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