Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MPKLTLVYISLSGNTQSFVKRLSEQLSTWHNCQVSTINIKEQNHQTFPVDQPFVALLPTYLEGGNGIDNGDQEILTIPLGDFIAAHNNVKNCIGIVGSGNRNFNNQYCLTAKQYSERFGFPMLGDFELRGTSSDVERIANIIVETLSNFKA--
1RLJ Chain:A ((1-135))
ENLYFQSNAMVQIIFDSKTGNVQRFVNKTG-------------FQQIRKVDEMDHVDTPFVLVTYTTNFGQ----------VPASTQSFLEKYAHL--LLGVAASGNKVWGDNFAKSADTISRQYQVPILHKFELSGTSKDVELFTQEVERVVTKSSAKM
General information:
TITO was launched using:
RESULT:
Template:
1RLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88845 for 996 contacts (-89.2/contact) +
2D Compatibility (PS) -13020 + (NN) 414 + (LL) 896
1D Compatibility (HY) -5600 + (ID) 1600
Total energy: -107755.0 ( -108.19 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_1RLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RLJ-query.scw
PDB file :
Tito_Scwrl_1RLJ.pdb
: