Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEEETDIKNGKKKVVKKKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPGEAETILKRMGMDERKTDIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL---
3P8B Chain:B ((2-148))
-AGKIFAVRVTHGQEETTAKLIYSKVRTYNLP--IYAILAPSR-----------------VKGYIFVEAPNKGVVDEAIRGIRHARGV--------LPGEVPFKEIEHFLE-----EKPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISKL
General information:
TITO was launched using:
RESULT:
Template:
3P8B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78114 for 996 contacts (-78.4/contact) +
2D Compatibility (PS) -15798 + (NN) -7194 + (LL) 1360
1D Compatibility (HY) -5600 + (ID) 1550
Total energy: -106896.0 ( -107.33 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_3P8B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P8B-query.scw
PDB file :
Tito_Scwrl_3P8B.pdb
: