Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSNGDKLSLSVQNL-ANTNEITIVQAIGELKKSGK-------DAIPVLVEALKEE-GSLCNIAAAVLGEFGEDAS----EAAEELSCLLKSHAEDTRMAAAISLMRIGKP-------SLPFVIKIAQESEGQSCFWASWCIAWIDPSCI-EPKMYKCLKYEHEHPSGIVAPFAAEEALGKLIAFQLKDKED
2DB0 Chain:A ((70-247))
------MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVK-EGISRLLLL-------
General information:
TITO was launched using:
RESULT:
Template:
2DB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69650 for 1130 contacts (-61.6/contact) +
2D Compatibility (PS) -16266 + (NN) -6334 + (LL) 252
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: -95548.0 ( -84.56 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_2DB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DB0-query.scw
PDB file :
Tito_Scwrl_2DB0.pdb
: