Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAERMVGKQAPRFEMEAVLASKEFGKVSLEENMKNDKWTVLFFYPMDFTFVCPTEITAMSDRYDEFEDLDAEVIGVSTDTIHTHLAWINTDRKENGLGQLKYPLAADTNHEVSREYGVLIEEEGVALRGLFIINPEGELQYQTVFHNNIGRDVDETLRVLQALQ----TGGLCPANWKPGQKTL
4MH2 Chain:E ((29-189))-----VTQHAPYFKGTAVV-SGEFKEISLDDF--KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEAH---------------


General information:
TITO was launched using:
RESULT:

Template: 4MH2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain E - contact count / total energy / energy per contact / energy per residue : 782 -127826 -163.46 -814.18
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain E : 0.82

3D Compatibility (PKB) : -163.46
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.82
QMean score : 0.666

(partial model without unconserved sides chains):
PDB file : Tito_4MH2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4MH2-query.scw
PDB file : Tito_Scwrl_4MH2.pdb: